Some selected publications

Kim, H., Zhao, B., Snesrud, E.C., Haas, B.J., Town, C.D., and J. Quackenbush. 2002. Use of RNA and genomic DNA references for inferred comparisons in DNA microarray analyses. BioTechniques. 33: 924-930. Supplementary material

Quackenbush J. The power of public access: the human genome project and the scientific process. Nat Genet 2001 Sep;29(1):4-6.

Gaspard R, Dharap S, Malek J, Qi R, Quackenbush J.Optimized growth conditions for direct amplification of cDNA clone inserts from culture. Biotechniques 2001 Jul;31(1):35-6.

Quackenbush J. Computational analysis of microarray data. Nat Rev Genet 2001 Jun;2(6):418-27.

Yuan Q, Quackenbush J, Sultana R, Pertea M, Salzberg SL, Buell CR. Rice bioinformatics. analysis of rice sequence data and leveraging the data to other plant species. Plant Physiology 2001 Mar;125(3):1166-74.

Quackenbush J. Crop plant genomes yield huge prospects. Nature yearbook of science and technology 2001. p26-28.

Hegde P, Qi R, Abernathy K, Gay C, Dharap S, Gaspard R, Hughes JE, Snesrud E, Lee N, Quackenbush J. A concise guide to cDNA microarray analysis. Biotechniques 2000 Sep;29(3):548-562.

Quackenbush J, Cho J, Lee D, Liang F, Holt I, Karamycheva S, Parvizi B, Pertea G, Sultana R, White J. The TIGR Gene Indices: analysis of gene transcript sequences in highly sampled eukaryotic species. Nucleic Acids Research 2001 Jan 1;29(1):159-64.

The Arabidopsis genome initiative. Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 408, 796 - 815 (2000).

Quackenbush J, Liang F, Holt I, Pertea G, Upton J. The TIGR gene indices: reconstruction and representation of expressed gene sequences. Nucleic Acids Research 2000 Jan 1;28(1):141-5.